AMUTHA R. Associate Professor

- Department of Bioinformatics
- School of Life Sciences
- amutha_ramu@yahoo.com, ramutha@bicpu.edu.in
Academic Activity


Educational Qualification (UG,PG & Higher Order)
S.No | Degree | Subject/Title of thesis | University/Board | Year of Passing |
---|---|---|---|---|
1 | Ph. D | Physics | University of Madras | 2002 |
2 | M.Phil | Physics | University of Madras | 1997 |
3 | B.Ed | Physical Sciences | Manonmanium Sundaranar University | 1996 |
4 | M. Sc | Physics | Manonmanium Sundaranar University | 1995 |
5 | B. Sc | Physics | Manonmanium Sundaranar University | 1993 |
Area of Specializaion
Awards / Prizes Conferred
S.No | Name / Title of the Award | Type | Name of the Agency conferred the Award | Year of the Award | Amount for Cash Award |
---|---|---|---|---|---|
1 | Best poster award | INTERNATIONAL | The Ohio State University, Ohio, USA | 2004 | 500USD |
2 | N. N. Saha Award for best poster presentation | NATIONAL | Indian Biological Science Society | 2002 | 0 |
3 | Senior Scholarship | NATIONAL | Lady Tata Memorial Trust | 2000 | 0 |
Teaching Experience
S.No | Designation | Department/Centre | Institution |
---|---|---|---|
1 | Assistant Professor | Centre for Bioinformatics | Pondicherry University |
2 | Associate Profesor | Department of Bioinformatics | Pondicherry University |
3 | Profesor | Department of Bioinformatics | Pondicherry University |
Research Experience
S.No | Designation | Department/Centre | Institution | Area of Research |
---|---|---|---|---|
1 | Project Assistanceship | Chemical Laboratory | Central Leather Research Institute | Computational Biophysics |
2 | Ph D | Chemical Laboratory / Central Leather Research Institute | University of Madras, India | Physics - Biophysics |
3 | Postdoctoral Fellow | Center for Computational Biology & Bioinformatics, School of Medicine | University of Pittsburgh, USA | Computational Biology |
4 | Postdoctoral Fellow | Department of Biomedical Informatics | The Ohio State University, USA | Computational Biology |
5 | Postdoctoral Fellow | Laboratory of Molecular Design, Center for Bioinformatics, Institute of Molecular & Cellular Bioscie | The University of Tokyo, Japan | Computational Biology |
6 | Postdoctoral Fellow | Department of Theoretical Chemistry | Katholieke Universiteit Leuven, Belgium | Computational Biology |
Industry Experience
S.No | Designation | Company/Corporate | Nature of Work |
---|
Contribution towards Innovation
S.No | Name of the Work/Contribution | Specialization | Remarks |
---|
Patent Details
S.No | Title | Status | Patent Number | Year of Award | Type | Commercialized Status |
---|
Papers Published in UGC Approved Journals
S.No | Title | Name of the Authors as per the order in Paper | Journal Name | Volume, Issue & Page Nos. | Year | Impact Factor |
---|---|---|---|---|---|---|
1 | A Bioinformatics approach to the identification of novel deleterious mutations of human TPMT through validated screening and molecular dynamics | Sidharth Saxena, T. P. Krishna Murthy, C. R. Chandrashekhar, Lavan S. Patil, Abhinav Aditya, Rohit Shukla, Arvind Kumar Yadav, Tiratha Raj Singh, Mahesh Samantaray & Amutha Ramaswamy | Scientific reports | Vol 12: 18872 https://doi.org/10.1038/s41598-022-23488-z | 2022 | 5.516 |
2 | Identification of inhibitor against H. pylori HtrA protease using structure-based virtual screening and molecular dynamics simulations approaches | Nivedita Rai, R. Muthukumaran and Amutha Ramaswamy | Microbial Pathogenesis | 2018 May;118:365-377. doi: 10.1016/j.micpath.2018.03.027. | 2018 | 2.332 |
3 | Molecular dynamic study of TMPA mediated dissociation of Nur77-LKB1 complex | Ikrormi Rungsung, R. Muthukumaran and Amutha Ramaswamy | Comput Biol Chem | doi: 10.1016/j.compbiolchem.2018.06.002. | 2018 | 1.33 |
4 | Molecular Dynamics of Interaction of Sesamin and related compounds with the cancer marker β-catenin/T-Cell factor 4 (Tcf4) complex: An In-silico st | BinduMadhuri Cavuturu, Vishwambar Vishnu Bhandare, Ramaswamy Amutha and Neelakantan Arumugam, | Journal of Biomolecular Structure & Dynamics | https://doi.org/10.1080/07391102.2018.1442250 | 2018 | 3.1 |
5 | Effects of PJS causing missense mutations L67P, L182P, G242V and R297S on the structural dynamics of LKB1 (Liver kinase B1) protein | Ikrormi Rungsung and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | https://doi.org/10.1080/07391102.2018.1441070 | 2018 | 3.1 |
6 | Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115,122 | Muthukumaran Rajagopalan, Sangeetha Balasubramanian, Ilya Ioshikhes, Amutha Ramaswamy | Eur Biophys J | Vol.46 (5), pp 471-484 | 2017 | 1.5 |
7 | The conformational feasibility for the formation of reaching dimer in ASV and HIV integrase: a molecular dynamics study | Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D. Andrake & Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | Vol 35 (16), pp 3469-85 | 2017 | 3.1 |
8 | Insights into the RNA binding mechanism of human L1 ORF1p: a molecular dynamics study | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | Mol Biosyst | Vol. 13, pp 1728-1743 | 2017 | 2.78 |
9 | Structural dynamics of Wild Type and Mutated forms of Human L1 Endonuclease and insights into its Sequence specific Nucleic acid Binding mechanism: a | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | J Mol Graph Model | Vol.76, pp 43-55 | 2017 | 1.75 |
10 | Molecular Dynamics of double stranded Xylo Nucleic Acid (XyloNA) | Amutha Ramaswamy, Daryna Smyrnova, Mattheus Froeyen, Mohitosh Maiti, Piet Herdewijn, and Arnout Ceulemans | J. Chem. Theory Comput | Vol.13 (10), pp 5028–5038 | 2017 | 5.25 |
11 | The proteinopathy of D169G and K263E mutants at the RNA Recognition Motif (RRM) domain of tar DNA-binding protein (tdp43) causing neurological disorde | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | 2017 Apr 7:1-19. doi: 10.1080/07391102.2017.1310670 | 2017 | 3.1 |
12 | Dynamics of Liver kinase B1 in the presence of the allosteric activators, STe20 Related Adapterα and Mouse protein 25α: a molecular dynamics analysi | Ikrormi Rungsung and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | Vol 35(5), pp. 1138-1152 | 2017 | 3.1 |
13 | Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43 | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Advances in Bioinformatics | volume 2016 (2016), 13 pages http://dx.doi.org/10.1155/2016/8792814 | 2016 | 0 |
14 | Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Computational Biology and Chemistry | 61 (2016) 97–108 | 2016 | 1.12 |
15 | Temperature dependent dynamics of DegP-trimer: a molecular dynamics study | Nivedita Rai and Amutha Ramaswamy | Computational and Structural Biotechnology Journal | 13 (2015) 329–338 | 2015 | 4.148 |
16 | Conformational Analysis on the Wild Type and Mutated forms of Human ORF1p: a molecular dynamics study | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | Mol. BioSyst | 11, pp. 1987-1999 | 2015 | 3.18 |
17 | Structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | Journal of Computer Aided Molecular Design | Vol. 29(4), 371-85 | 2015 | 3 |
18 | The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | Eur Biophys J | Vol. 43(10-11), 485-98 | 2014 | 1.47 |
19 | Pharmacophore Modelling and Electronic Feature Analysis of hydroxamic acid derivatives, the HIV integrase inhibitors | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | SAR and QSAR in Environmental Research | Vol. 24(9), 753-771, 2013 | 2013 | 1.64 |
20 | Pharmacophore based 3D-QSAR modeling and free energy analysis of VEGFR-2 inhibitors | Muthukumaran Rajagopalan, Sangeetha Balasubramanian, Amutha Ramaswamy and Premendu Prakash Mathur | Journal Of Enzyme Inhibition And Medicinal Chemistry | Vol 28, No:6 pp.1236-1246 | 2013 | 3.638 |
21 | Development of Anti-HIV Activity Models of Lysine Sulfonamide Analogues: A QSAR Perspective | R. Muthukumaran, B. Sangeetha, R. Amutha and P.P. Mathur | Current Computer-Aided Drug Design, | Vol 8, pp. 70-82 | 2012 | 1.5 |
22 | Solution Structure and Conformational Dynamics of Deoxyxylonucleic Acid (dXNA): An Orthogonal Nucleic Acid Candidate | M Mohitosh; S Vanessa; A Mikhail; L Eveline; R Helmut; F Mathy; R Amutha; C Arnout; M Andreas; H Piet. | Chemistry – A European Journal | Vol 18, No.3, pp. 869-879 | 2012 | 5.8 |
23 | Structural Dynamics Of Full Length Retroviral Integrase: a molecular dynamics analysis | B. Sangeetha, R. Muthukumaran and R. Amutha | Journal of Biomolecular Structure & Dynamics | Vol 29, No. 6, 659-670 | 2012 | 3.1 |
24 | The helical structure of xylose-DNA | Ramaswamy, Amutha; Froeyen, Mathy; Herdewijn, Piet; Ceulemans, Arnout | Journal of the American Chemical Society | Vol. 132, pp. 587-595 | 2010 | 14.0 |
25 | Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone | Amutha Ramaswamy and Ilya Ioschikhes | BMC Structural Biology | 7, 76 | 2007 | 1.77 |
26 | Structural Dynamics of Nucleosome Core Particle: Comparison with Nucleosomes Containing Histone Variants | Amutha Ramaswamy, Ivet Bahar and Ilya Ioschikhes | Proteins: Structure,Function and Bioinformatics | Vol.58, No.3, pp.683-696 | 2005 | 2.5 |
27 | Bader’s and reactivity descriptors analysis on DNA base pairs | Ramakrishnan Parthasarathi, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami | J. Phys. Chem. A | Vol.108, No.17, pp.3817-3828 | 2004 | 2.84 |
28 | Role of twist and slide on the solvation of stacked cytosine dimer: an ab initio study | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Theo. Chem. Acc. | Vol.107, No.6, pp.343-350 | 2002 | 1.80 |
29 | Interaction of benzidine with DNA: experimental and modeling studies | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Chem. Phys. Lett | Vol.344, No.1, pp.40-48 | 2001 | 2.0 |
30 | Free energy calculation for DNA bases in various solvents using Flory-Huggins theory | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Chem. Phys. Lett | Vol.335, No.5, pp.489-495 | 2001 | 2.0 |
31 | Assessment of importance of solvent in the calculation of condensed Fukui function: A self-consistent reaction field calculation study | Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami | Chem. Phys. Lett | Vol.308, No.3, pp.223-228 | 1999 | 2.0 |
32 | Ab initio potential energy surface of Ne…CO complex | Venkatesan Subramanian, Krishnaswamy Chitra, Dakshinamoorthy Sivanesan, Amutha Ramaswamy and Sambasivam Sankar | Chem. Phys. Lett | Vol.307, No.5, pp.493-496 | 1999 | 2.0 |
33 | Effective atomic numbers and mass attenuation coefficients of some thermoluminescent dosimetric compounds for total photon interaction | Shivaramu, Amutha Ramaswamy and Vaithyanathan Ramprasath | Nuclear Science and Engineering | Vol.132, No.1, pp.148-153 | 1999 | 0.44 |
34 | Hardness profile of Interaction of HF with He, Ne and Ar: Density functional and MP2 calculation | Venkatesan Subramanian, Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Jagnathan Padmanabhan and Thirumalachari Ramasami | Chem. Phys. Lett | Vol.294, No.4, pp.285-291 | 1998 | 2.0 |
Papers Published in Non UGC Approved Peer Reviewed Journals
S.No | Title | Name of the Authors as per the order in Paper | Journal Name | Volume, Issue & Page Nos. | Year | Impact Factor |
---|---|---|---|---|---|---|
1 | A Bioinformatics approach to the identification of novel deleterious mutations of human TPMT through validated screening and molecular dynamics | Sidharth Saxena, T. P. Krishna Murthy, C. R. Chandrashekhar, Lavan S. Patil, Abhinav Aditya, Rohit Shukla, Arvind Kumar Yadav, Tiratha Raj Singh, Mahesh Samantaray & Amutha Ramaswamy | Scientific reports | Vol 12: 18872 https://doi.org/10.1038/s41598-022-23488-z | 2022 | 5.516 |
2 | Identification of inhibitor against H. pylori HtrA protease using structure-based virtual screening and molecular dynamics simulations approaches | Nivedita Rai, R. Muthukumaran and Amutha Ramaswamy | Microbial Pathogenesis | 2018 May;118:365-377. doi: 10.1016/j.micpath.2018.03.027. | 2018 | 2.332 |
3 | Molecular dynamic study of TMPA mediated dissociation of Nur77-LKB1 complex | Ikrormi Rungsung, R. Muthukumaran and Amutha Ramaswamy | Comput Biol Chem | doi: 10.1016/j.compbiolchem.2018.06.002. | 2018 | 1.33 |
4 | Molecular Dynamics of Interaction of Sesamin and related compounds with the cancer marker β-catenin/T-Cell factor 4 (Tcf4) complex: An In-silico st | BinduMadhuri Cavuturu, Vishwambar Vishnu Bhandare, Ramaswamy Amutha and Neelakantan Arumugam, | Journal of Biomolecular Structure & Dynamics | https://doi.org/10.1080/07391102.2018.1442250 | 2018 | 3.1 |
5 | Effects of PJS causing missense mutations L67P, L182P, G242V and R297S on the structural dynamics of LKB1 (Liver kinase B1) protein | Ikrormi Rungsung and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | https://doi.org/10.1080/07391102.2018.1441070 | 2018 | 3.1 |
6 | Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115,122 | Muthukumaran Rajagopalan, Sangeetha Balasubramanian, Ilya Ioshikhes, Amutha Ramaswamy | Eur Biophys J | Vol.46 (5), pp 471-484 | 2017 | 1.5 |
7 | The conformational feasibility for the formation of reaching dimer in ASV and HIV integrase: a molecular dynamics study | Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D. Andrake & Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | Vol 35 (16), pp 3469-85 | 2017 | 3.1 |
8 | Insights into the RNA binding mechanism of human L1 ORF1p: a molecular dynamics study | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | Mol Biosyst | Vol. 13, pp 1728-1743 | 2017 | 2.78 |
9 | Structural dynamics of Wild Type and Mutated forms of Human L1 Endonuclease and insights into its Sequence specific Nucleic acid Binding mechanism: a | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | J Mol Graph Model | Vol.76, pp 43-55 | 2017 | 1.75 |
10 | Molecular Dynamics of double stranded Xylo Nucleic Acid (XyloNA) | Amutha Ramaswamy, Daryna Smyrnova, Mattheus Froeyen, Mohitosh Maiti, Piet Herdewijn, and Arnout Ceulemans | J. Chem. Theory Comput | Vol.13 (10), pp 5028–5038 | 2017 | 5.25 |
11 | The proteinopathy of D169G and K263E mutants at the RNA Recognition Motif (RRM) domain of tar DNA-binding protein (tdp43) causing neurological disorde | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | 2017 Apr 7:1-19. doi: 10.1080/07391102.2017.1310670 | 2017 | 3.1 |
12 | Dynamics of Liver kinase B1 in the presence of the allosteric activators, STe20 Related Adapterα and Mouse protein 25α: a molecular dynamics analysi | Ikrormi Rungsung and Amutha Ramaswamy | Journal of Biomolecular Structure & Dynamics | Vol 35(5), pp. 1138-1152 | 2017 | 3.1 |
13 | Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43 | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Advances in Bioinformatics | volume 2016 (2016), 13 pages http://dx.doi.org/10.1155/2016/8792814 | 2016 | 0 |
14 | Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study | Vishwambhar Vishnu Bhandare and Amutha Ramaswamy | Computational Biology and Chemistry | 61 (2016) 97–108 | 2016 | 1.12 |
15 | Temperature dependent dynamics of DegP-trimer: a molecular dynamics study | Nivedita Rai and Amutha Ramaswamy | Computational and Structural Biotechnology Journal | 13 (2015) 329–338 | 2015 | 4.148 |
16 | Conformational Analysis on the Wild Type and Mutated forms of Human ORF1p: a molecular dynamics study | Muthukumaran Rajagopalan, Sangeetha Balasubramanian and Amutha Ramaswamy | Mol. BioSyst | 11, pp. 1987-1999 | 2015 | 3.18 |
17 | Structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | Journal of Computer Aided Molecular Design | Vol. 29(4), 371-85 | 2015 | 3 |
18 | The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | Eur Biophys J | Vol. 43(10-11), 485-98 | 2014 | 1.47 |
19 | Pharmacophore Modelling and Electronic Feature Analysis of hydroxamic acid derivatives, the HIV integrase inhibitors | Sangeetha Balasubramanian, Muthukumaran Rajagopalan and Amutha Ramaswamy | SAR and QSAR in Environmental Research | Vol. 24(9), 753-771, 2013 | 2013 | 1.64 |
20 | Pharmacophore based 3D-QSAR modeling and free energy analysis of VEGFR-2 inhibitors | Muthukumaran Rajagopalan, Sangeetha Balasubramanian, Amutha Ramaswamy and Premendu Prakash Mathur | Journal Of Enzyme Inhibition And Medicinal Chemistry | Vol 28, No:6 pp.1236-1246 | 2013 | 3.638 |
21 | Development of Anti-HIV Activity Models of Lysine Sulfonamide Analogues: A QSAR Perspective | R. Muthukumaran, B. Sangeetha, R. Amutha and P.P. Mathur | Current Computer-Aided Drug Design, | Vol 8, pp. 70-82 | 2012 | 1.5 |
22 | Solution Structure and Conformational Dynamics of Deoxyxylonucleic Acid (dXNA): An Orthogonal Nucleic Acid Candidate | M Mohitosh; S Vanessa; A Mikhail; L Eveline; R Helmut; F Mathy; R Amutha; C Arnout; M Andreas; H Piet. | Chemistry – A European Journal | Vol 18, No.3, pp. 869-879 | 2012 | 5.8 |
23 | Structural Dynamics Of Full Length Retroviral Integrase: a molecular dynamics analysis | B. Sangeetha, R. Muthukumaran and R. Amutha | Journal of Biomolecular Structure & Dynamics | Vol 29, No. 6, 659-670 | 2012 | 3.1 |
24 | The helical structure of xylose-DNA | Ramaswamy, Amutha; Froeyen, Mathy; Herdewijn, Piet; Ceulemans, Arnout | Journal of the American Chemical Society | Vol. 132, pp. 587-595 | 2010 | 14 |
25 | Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone | Amutha Ramaswamy and Ilya Ioschikhes | BMC Structural Biology | 7, 76 | 2007 | 1.77 |
26 | Structural Dynamics of Nucleosome Core Particle: Comparison with Nucleosomes Containing Histone Variants | Amutha Ramaswamy, Ivet Bahar and Ilya Ioschikhes | Proteins: Structure,Function and Bioinformatics | Vol.58, No.3, pp.683-696 | 2005 | 2.5 |
27 | Bader’s and reactivity descriptors analysis on DNA base pairs | Ramakrishnan Parthasarathi, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami | J. Phys. Chem. A | Vol.108, No.17, pp.3817-3828 | 2004 | 2.84 |
28 | Role of twist and slide on the solvation of stacked cytosine dimer: an ab initio study | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Theo. Chem. Acc. | Vol.107, No.6, pp.343-350 | 2002 | 1.80 |
29 | Interaction of benzidine with DNA: experimental and modeling studies | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Chem. Phys. Lett | Vol.344, No.1, pp.40-48 | 2001 | 2.0 |
30 | Free energy calculation for DNA bases in various solvents using Flory-Huggins theory | Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair | Chem. Phys. Lett | Vol.335, No.5, pp.489-495 | 2001 | 2.0 |
31 | Assessment of importance of solvent in the calculation of condensed Fukui function: A self-consistent reaction field calculation study | Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami | Chem. Phys. Lett | Vol.308, No.3, pp.223-228 | 1999 | 2.0 |
32 | Ab initio potential energy surface of Ne…CO complex | Venkatesan Subramanian, Krishnaswamy Chitra, Dakshinamoorthy Sivanesan, Amutha Ramaswamy and Sambasivam Sankar | Chem. Phys. Lett | Vol.307, No.5, pp.493-496 | 1999 | 2.0 |
33 | Effective atomic numbers and mass attenuation coefficients of some thermoluminescent dosimetric compounds for total photon interaction | Shivaramu, Amutha Ramaswamy and Vaithyanathan Ramprasath | Nuclear Science and Engineering | Vol.132, No.1, pp.148-153 | 1999 | 0.44 |
34 | Hardness profile of Interaction of HF with He, Ne and Ar: Density functional and MP2 calculation | Venkatesan Subramanian, Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Jagnathan Padmanabhan and Thirumalachari Ramasami | Chem. Phys. Lett | Vol.294, No.4, pp.285-291 | 1998 | 2.0 |
Papers Published in Conference Proceedings
S.No | Title | Name of the Authors as per the order in Paper | Details of Conference Publication | Page Nos. | Year |
---|---|---|---|---|---|
1 | Global dynamics of nucleosome arrays: Influence of variant histone H2A.Z | Li wang, Amutha Ramaswamy and Ilya Ioschikhes | Proc. IEEE 5th Symposium on Bioinformatics and Bioengineering (BIBE’05) | pp.271-275 | 2005 |
Books
S.No | Title of the Book | Name of the Authors as per the order in Book | Publisher | Year | ISBN No. |
---|
Chapters in Books
S.No | Title of the Chapters | Name of the Authors | Title of the Book | Publisher | Year | ISBN No. |
---|---|---|---|---|---|---|
1 | Biomolecular talks-Part1: a theoretical revisit on molecular modeling and docking approaches | Ramaswamy AMUTHA, Balasubramanian SANGEETHA, Rajagopalan MUTHUKUMARAN | Molecular Docking for Computer-Aided Drug Design: Fundamentals, Techniques, Resources and Applications | Elsevier | 2020 | 978-0-12-822312-3 |
2 | Biomolecular talks - Part 2: applications and challenges of molecular docking approaches; | Ramaswamy AMUTHA, Balasubramanian SANGEETHA, Rajagopalan MUTHUKUMARAN | Molecular Docking for Computer-Aided Drug Design: Fundamentals, Techniques, Resources and Applications | Elsevier | 2020 | 978-0-12-822312-3 |
3 | Bioinformatics Databases and Internet Resources | R. Amutha, R. Muthukumaran and B. Sangeetha | Agriculture Bioinformatics | New India Publishing Agency | 2015 | 978-93-83305-42-1 |
4 | Dynamics of modeled oligonucleosomes and the role of histone variant proteins in nucleosome organization | Amutha Ramaswamy and Ilya Ioschikhes | Advances in Protein Chemistry and Structural Biology | Academic Press | 2013 | 978-0-12-410523-2 |
Edited Books
S.No | Title of the Book | Name of the Authors as per the order in Book | Publisher | Year | ISBN No. |
---|
Ongoing Projects
S.No | Title of the Project | Sponsored By | Period | Sanctioned Amount(Rs. Lakh) | Year |
---|
Ongoing Consultancy Works
S.No | Title of the Consultancy Work | Sponsored By | Period | Sanctioned Amount(Rs. Lakh) | Year |
---|
Completed Projects
S.No | Title of the Project | Sponsored By | Period | Sanctioned Amount(Rs. Lakh) | Year |
---|---|---|---|---|---|
1 | Role of Nucleoplasmin in the assembly of histone proteins and nucleosomes: A theoretical perspective | UGC, India | 2013 -2016 | 12,43,800/- | 2013 |
2 | The role of histone post-translational modifications in nucleosome structure: Applications of quantum / coarse grained / molecular dynamics approaches | SERB | 2012-2015 | 19,08,000/- | 2012 |
Completed Consultancy Works
S.No | Title of the Consultancy Work | Sponsored By | Period | Sanctioned Amount(Rs. Lakh) | Year |
---|
Career Guidance Offered to students
S.No | Name of the Scheme | No. of Students | Competitive Examinations/ Career Counseling | No. of Students Passed | No. of Students Placed |
---|
List of capability enhancement such as Soft skill development, Remedial coaching, Language lab,
Bridge courses, Yoga, Meditation, Personal Counselling and Mentoring etc.,
S.No | Name of the Programme/Scheme | Date of Implementation | No. of Students Enrolled | Agencies Involved |
---|
Research Guidance - PG
S.No | Year | Degree | No. of Students Awarded | Department/Centre |
---|---|---|---|---|
1 | 2020 | M.TECH | 1 | Department of Bioinformatics |
2 | 2020 | M.SC | 3 | Centre for Bioinformatics |
3 | 2019 | M.TECH | 1 | Centre for Bioinformatics |
4 | 2019 | M.SC | 4 | Centre for Bioinformatics |
5 | 2018 | M.SC | 3 | Centre for Bioinformatics |
6 | 2018 | M.TECH | 1 | Centre for Bioinformatics |
7 | 2018 | M.SC | 3 | Centre for Bioinformatics |
8 | 2016 | M.SC | 2 | Centre for Bioinformatics |
9 | 2014 | M.SC | 3 | Centre for Bioinformatics |
10 | 2013 | M.TECH | 1 | Centre for Bioinformatics |
11 | 2012 | M.SC | 4 | Centre for Bioinformatics |
12 | 2011 | M.SC | 2 | Centre for Bioinformatics |
13 | 2010 | M.SC | 4 | Centre for Bioinformatics |
14 | 2010 | M.SC | 1 | Avinashilingam University for Women, Coimbatore |
Research Guidance - Ph.D
S.No | Student Name | Registration Date | Registration No. | Thesis Title | Thesis Submitted Status | Thesis Submitted Date | Vivavoce Completed Status | Date Awarded |
---|---|---|---|---|---|---|---|---|
1 | Nivedita Rai | 13-08-2011 | Dynamics of multitasking DegP and the role of HpHtrA as therapeutic target: a computational approach on HtrA family proteins | YES | 27-04-2017 | YES | 02-04-2018 | |
2 | Ikrormi Rungsung | 13-08-2011 | Structural Insights into the Regulatory Mechanisms Of Lkb1 By Stradα, Mo25α And Nur77: A Computational Approach | YES | 04-04-2017 | YES | 29-11-2017 | |
3 | R. Muthukumaran | 25-07-2013 | Mechanistic insights into the retrotransposition pathway mediated by LINE-1 proteins ORF1p and ORF2p | YES | 23-12-2016 | YES | 20-11-2017 | |
4 | Vishwamber Vishnu Bhandare | 27-07-2010 | Rational design and structural dynamics of possible siRNAs targeting ALS-associated mutants of tdp43 and their interaction with human argonaute2 protein: a computational approach | YES | 20-10-2016 | YES | 08-11-2017 | |
5 | B. Sangeetha | 03-12-2009 | Structure dynamics and inhibition of HIV 1 integrate: a molecular dynamics study | YES | 03-07-2014 | YES | 13-11-2015 |
Research Guidance - Post Doctoral
S.No | Scholar Name | Designation | Funding Agency | Fellowship Title | Year of Joining | Year of Completion |
---|
Financial assistance availed to attend conferences / workshops and to pay membership fee
of professional bodies during the year
S.No | Conference/ workshop attended for which financial support provided | Professional body for which membership fee is provided | Amount of Support | Place | From Date | To Date | Year |
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E-Lecture Details
S.No | E-Lecture Title | Development of e-content/e-learning/delivering | Member of Editorial Bodies | Reviewer/Referee of | |||
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Content/Module Title | Institution/Platform | Year | Weblink |
Details of Online Education Conducted
S.No | Nature of Online Course | No. of Sessions | Target Group | Date |
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Invited Talks in Conference/Seminar/Workshop/Training Programme
S.No | Title of the Paper | Conferences/Seminar/Workshop/Training Programme | Organized by | Whether International / National / State / Regional / College or University Level | From | To | Year |
---|---|---|---|---|---|---|---|
1 | Bioinformatics in Interdisciplinary Research-Talk-II | Online Faculty Development Programme (FDP) On Basics of bio-informatics | E & ICT Academy, National Institute of Technology, Warangal.&University College of Engineering BITCa | National | 26-05-2021 | 26-06-2021 | 2021 |
2 | Bioinformatics in Interdisciplinary Research-Talk-I | Online Faculty Development Programme (FDP) On Basics of bio-informatics | E & ICT Academy, National Institute of Technology, Warangal.&University College of Engineering BITCa | National | 26-05-2021 | 26-06-2021 | 2021 |
3 | Genomics | Science day Celebration | Societe Progressiste Govt. Aided High School, Puducherry | school level | 29-02-2019 | 29-02-2019 | 2019 |
4 | HIV-1 Integrase: A structural perspective from molecular dynamic simulations | National Symposium on “Cross-talk in omics” | Centre for Bioinformatics | National | 09-08-2017 | 09-08-2017 | 2017 |
5 | The conformational relaxation of nucleosomes acetylated at H3K56 and H3K115,122 | International Conference on Bioinformatics (INCOB 2016) | A-Star, Singapore | International | 21-09-2016 | 23-09-2016 | 2016 |
6 | Biomolecular Functional dynamics from theoretical perspective | Seminar | Mechanobiology Institute, National University of Singapore, Singapore | International | 14-01-2014 | 14-01-2014 | 2014 |
7 | Structural Dynamics in Drug Design | Structural Dynamics in Drug Design | Centre for Bioinformatics | National | 14-02-2013 | 15-02-2013 | 2013 |
8 | Application of Pharmacophore Based Approaches in Drug Design | National cum workshop on “Prespectives of Chemoinformatics for Drug Discovery | Centre for Bioinformatics | National | 21-02-2013 | 22-02-2013 | 2013 |
9 | Exploring conformational dynamics of biomolecules | Seminar | Bioinformatics Institute (A*STAR), Singapore | International | 04-01-2012 | 04-01-2012 | 2012 |
10 | The Left Handed Xylose-DNA: an influence of sugar moiety on duplex DNA | Chennai Chemistry Conference -2011 | Indian Institute of Technology, Chennai | National | 11-02-2011 | 13-02-2011 | 2011 |
11 | Functional Dynamics of Biomolecules: a perspective of normal mode analysis | National Conference on Computer Aided Drug Designing | SRM University | National | 24-03-2011 | 25-03-2011 | 2011 |
12 | Coarse Grained Dynamics of Biomolecules | National Seminar on Computational Biology | Centre for Bioinformatics, Pondicherry University | National | 15-09-2010 | 17-09-2010 | 2010 |
13 | The Helical structure of Xylose-DNA: a molecular dynamics approach | 3rd National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design (SBCADD-2010) | Alagappa University | National | 20-12-2010 | 22-12-2010 | 2010 |
14 | Coarse Grained Molecular Dynamics Simulations to Understand Functional Dynamics of Biomolecules | Seminar by Department of Biotechnology | Department of Biotechnology, Pondicherry University | University level | 01-10-2009 | 01-10-2009 | 2009 |
15 | Similarity search and sequence alignments | Winter School On “Bioinformatics and its Applications in Agriculture | Indian Council of Agricultural Research, New Delhi at Bioinformatics Centre (DIC),Kerala Agricultura | National | 1-12-2009 | 21-12-2009 | 2009 |
16 | Databases and internet resources for Bioinformatics Analysis | Winter School On “Bioinformatics and its Applications in Agriculture | Indian Council of Agricultural Research, New Delhi at Bioinformatics Centre (DIC),Kerala Agricultura | National | 1-12-2009 | 21-12-2009 | 2009 |
17 | Application of Bioinformatics in the field of nanotechnology | National Symposium on Introduction to Nano Technology and Applications | Department of Plant Biology and Plant Biotechnology, A.V.C. College [Autonomous], Mayiladuthurai | National | 5-1-2009 | 5-1-2009 | 2009 |
Conferences/Seminars Organized
S.No | Title of the Programme | Sponsors | Venue & Duration | Whether International / National / State / Regional / College or University Level | From | To | Year |
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Workshop Organized
S.No | Title of the Programme | Sponsors | Venue & Duration | Whether International / National / State / Regional / College or University Level | From | To | Year |
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Administrative Responsibilities in the Government and Quasi Government Agencies
S.No | Name of the Position | Agency/Organisation | Duration | Nature of Duties |
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Affiliation in Academic Bodies/Societies
S.No | Name of the Body/Society | Nature of Affiliation | Year |
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Participation & Extension Activities (Academic/Administraion)
S.No | Name of the Position (Head, Dean, Co-ordinator, Director, etc.,) | Duration | Nature of Dutites |
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Participation & Extension Activities (Co-Curricular)
S.No | Name of the Position (NSS, NCC, Warden etc.,) | Duration | Nature of Dutites |
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Collaboration with Institution/Industry
S.No | Collaborator Name | Designation | Institution/Industry | Type | Nature of Collaboration | Period of Collaboration | Visits to Collaborating Institution / Industry |
Details of Collaborative Research/Teaching | ||
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From Date | To Date | From Date | To Date |
Faculty Development Programme Attended (Orientation, Refresher, other Short Term Course during the year)
S.No | Title of the FDP | Organiser | Venue | Duration | From Date | To Date | Year |
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Details of Executive Development Prog/Management Development Prog. conducted
S.No | Name of the Programme | No. of Participants | Venue | Duration | From Date | To Date | Year | Revenue Generated |
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Participation in IMPESS, IMPRINT, SPARC, STARS, LEAP Programme etc and DSF Funding Programme
S.No | IMPRESS/IMPRINT/SPARC/STARS/LEAP/Others | Place | From Date | To Date | Year |
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Enrolment under ARPIT Programme
S.No | Name of the Programme | Period of the Programme | |
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From Date | To Date |